WEB-based GEne SeT AnaLysis Toolkit
 
Translating gene lists into biological insights...
 


User data and parameters: User data: textAreaUpload.txt, Organism: hsapiens, Id Type: ensembl_gene_stable_id, Ref Set: entrezgene, Significance Level: Top10, Statistics Test: Hypergeometric, MTC: BH, Minimum: 2

The results for each enriched gene sets are listed in this table.
For each gene set, the first row lists database name, gene set name , and corresponding gene set ID. The second row lists the following statistics:
Finally, genes in the gene set are listed. For each gene, the table lists the user uploaded ID and value (optional), Entrez ID, Ensembl Gene Stable ID, Gene symbol, and description. Ensembl Gene Stable ID and Entrez Gene ID are linked to the Ensembl and Entrez Gene databases, respectively.

Database:Transcription Target       Name:hsa_V$GATA2_01       ID:DB_ID:1891
C=104; O=3; E=0.08; R=35.54; rawP=8.43e-05; adjP=0.0039
Index UserID Value Gene Symbol Gene Name EntrezGene Ensembl
1  ENSG00000169891 NA REPS2 RALBP1 associated Eps domain containing 2 9185 ENSG00000169891
2  ENSG00000164418 NA GRIK2 glutamate receptor, ionotropic, kainate 2 2898 ENSG00000164418
3  ENSG00000162543 NA UBXN10 UBX domain protein 10 127733 ENSG00000162543


Database:Transcription Target       Name:hsa_YTATTTTNR_V$MEF2_02       ID:DB_ID:2431
C=691; O=5; E=0.56; R=8.92; rawP=0.0002; adjP=0.0046
Index UserID Value Gene Symbol Gene Name EntrezGene Ensembl
1  ENSG00000162852 NA CNST consortin, connexin sorting protein 163882 ENSG00000162852
2  ENSG00000164418 NA GRIK2 glutamate receptor, ionotropic, kainate 2 2898 ENSG00000164418
3  ENSG00000157224 NA CLDN12 claudin 12 9069 ENSG00000157224
4  ENSG00000109771 NA LRP2BP LRP2 binding protein 55805 ENSG00000109771
5  ENSG00000162543 NA UBXN10 UBX domain protein 10 127733 ENSG00000162543


Database:Transcription Target       Name:hsa_V$HFH3_01       ID:DB_ID:2043
C=189; O=3; E=0.15; R=19.56; rawP=0.0005; adjP=0.0077
Index UserID Value Gene Symbol Gene Name EntrezGene Ensembl
1  ENSG00000169891 NA REPS2 RALBP1 associated Eps domain containing 2 9185 ENSG00000169891
2  ENSG00000164418 NA GRIK2 glutamate receptor, ionotropic, kainate 2 2898 ENSG00000164418
3  ENSG00000162543 NA UBXN10 UBX domain protein 10 127733 ENSG00000162543


Database:Transcription Target       Name:hsa_V$MYB_Q6       ID:DB_ID:1971
C=253; O=3; E=0.21; R=14.61; rawP=0.0011; adjP=0.0120
Index UserID Value Gene Symbol Gene Name EntrezGene Ensembl
1  ENSG00000109501 NA WFS1 Wolfram syndrome 1 (wolframin) 7466 ENSG00000109501
2  ENSG00000039537 NA C6 complement component 6 729 ENSG00000039537
3  ENSG00000065923 NA SLC9A7 solute carrier family 9, subfamily A (NHE7, cation proton antiporter 7), member 7 84679 ENSG00000065923


Database:Transcription Target       Name:hsa_GATGKMRGCG_UNKNOWN       ID:DB_ID:2203
C=65; O=2; E=0.05; R=37.91; rawP=0.0013; adjP=0.0120
Index UserID Value Gene Symbol Gene Name EntrezGene Ensembl
1  ENSG00000077157 NA PPP1R12B protein phosphatase 1, regulatory subunit 12B 4660 ENSG00000077157
2  ENSG00000169891 NA REPS2 RALBP1 associated Eps domain containing 2 9185 ENSG00000169891


Database:Transcription Target       Name:hsa_CAGGTA_V$AREB6_01       ID:DB_ID:2404
C=780; O=4; E=0.63; R=6.32; rawP=0.0036; adjP=0.0237
Index UserID Value Gene Symbol Gene Name EntrezGene Ensembl
1  ENSG00000169891 NA REPS2 RALBP1 associated Eps domain containing 2 9185 ENSG00000169891
2  ENSG00000109771 NA LRP2BP LRP2 binding protein 55805 ENSG00000109771
3  ENSG00000065923 NA SLC9A7 solute carrier family 9, subfamily A (NHE7, cation proton antiporter 7), member 7 84679 ENSG00000065923
4  ENSG00000162543 NA UBXN10 UBX domain protein 10 127733 ENSG00000162543


Database:Transcription Target       Name:hsa_CAGGTG_V$E12_Q6       ID:DB_ID:2409
C=2450; O=7; E=1.99; R=3.52; rawP=0.0031; adjP=0.0237
Index UserID Value Gene Symbol Gene Name EntrezGene Ensembl
1  ENSG00000074527 NA NTN4 netrin 4 59277 ENSG00000074527
2  ENSG00000154553 NA PDLIM3 PDZ and LIM domain 3 27295 ENSG00000154553
3  ENSG00000065923 NA SLC9A7 solute carrier family 9, subfamily A (NHE7, cation proton antiporter 7), member 7 84679 ENSG00000065923
4  ENSG00000172572 NA PDE3A phosphodiesterase 3A, cGMP-inhibited 5139 ENSG00000172572
5  ENSG00000168675 NA C18orf1 chromosome 18 open reading frame 1 753 ENSG00000168675
6  ENSG00000162543 NA UBXN10 UBX domain protein 10 127733 ENSG00000162543
7  ENSG00000102383 NA ZDHHC15 zinc finger, DHHC-type containing 15 158866 ENSG00000102383


Database:Transcription Target       Name:hsa_V$MYC_Q2       ID:DB_ID:2274
C=182; O=2; E=0.15; R=13.54; rawP=0.0096; adjP=0.0282
Index UserID Value Gene Symbol Gene Name EntrezGene Ensembl
1  ENSG00000162852 NA CNST consortin, connexin sorting protein 163882 ENSG00000162852
2  ENSG00000162543 NA UBXN10 UBX domain protein 10 127733 ENSG00000162543


Database:Transcription Target       Name:hsa_V$HP1SITEFACTOR_Q6       ID:DB_ID:2223
C=229; O=2; E=0.19; R=10.76; rawP=0.0149; adjP=0.0282
Index UserID Value Gene Symbol Gene Name EntrezGene Ensembl
1  ENSG00000162814 NA SPATA17 spermatogenesis associated 17 128153 ENSG00000162814
2  ENSG00000162543 NA UBXN10 UBX domain protein 10 127733 ENSG00000162543


Database:Transcription Target       Name:hsa_GGGAGGRR_V$MAZ_Q6       ID:DB_ID:2430
C=2250; O=6; E=1.83; R=3.29; rawP=0.0088; adjP=0.0282
Index UserID Value Gene Symbol Gene Name EntrezGene Ensembl
1  ENSG00000077157 NA PPP1R12B protein phosphatase 1, regulatory subunit 12B 4660 ENSG00000077157
2  ENSG00000162852 NA CNST consortin, connexin sorting protein 163882 ENSG00000162852
3  ENSG00000154553 NA PDLIM3 PDZ and LIM domain 3 27295 ENSG00000154553
4  ENSG00000169891 NA REPS2 RALBP1 associated Eps domain containing 2 9185 ENSG00000169891
5  ENSG00000198734 NA F5 coagulation factor V (proaccelerin, labile factor) 2153 ENSG00000198734
6  ENSG00000102383 NA ZDHHC15 zinc finger, DHHC-type containing 15 158866 ENSG00000102383




WebGestalt is currently developed and maintained by Jing Wang and Bing Zhang at the Zhang Lab. Other people who have made significant contribution to the project include Dexter Duncan, Stefan Kirov, Zhiao Shi, and Jay Snoddy.

Funding credits: NIH/NIAAA (U01 AA016662, U01 AA013512); NIH/NIDA (P01 DA015027); NIH/NIMH (P50 MH078028, P50 MH096972); NIH/NCI (U24 CA159988); NIH/NIGMS (R01 GM088822).